課程大綱

課程資訊

課程名稱	生態模擬專題討論 Ecological Modeling Seminar
開課學期	103-1
授課對象	理學院海洋生物及漁業組
授課教師	三木健
課號	Ocean7152
課程識別碼	241EM3630
班次
學分	2
全/半年	半年
必/選修	選修
上課時間	星期三A,B(18:25~20:10)
上課地點	海研232
備註	本課程以英語授課。與王慧瑜合開總人數上限：12人
Ceiba 課程網頁	http://ceiba.ntu.edu.tw/1031ecol_mod_sem
課程簡介影片
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課程概述	I open several related courses. Please visit our lab website for more detailed info on how to choose my lectures based on your preference. http://homepage.ntu.edu.tw/~tksmiki/for_Students_%28zhong_wen%29.html This is a course intended for students with basic knowledge of ecology, statistics, differential equations, and computer programming techniques and had some experience on modeling. We will discuss the application of mathematical modeling and computer programming techniques to investigate ecological questions. We will also discuss statistical analyses for identifying ecological patterns. Students will select a subject base on his/her own interest and present the progress of the chosen topic. The class is mainly in the form of discussion.
課程目標	The objectives are to provide students opportunities to discuss the application of mathematical modeling and computer programming techniques to investigate ecological questions.
課程要求	Students are required to do oral presentation on a topic of ecological modeling and participate discussion.
預期每週課後學習時數
Office Hours
指定閱讀
參考書目	No textbook. We will discuss primary journal articles.
評量方式 (僅供參考)

課程進度

週次	日期	單元主題
Week 1	9/16	[林梵絃, textbook] Chapter 2, <br> [鄭琬萱, paper] Metacommunity dynamics of bacteria in an arctic lake: the impact of species sorting and mass effects on bacterial production and biogeography. <br> [江勻楷, paper] Predators with Multiple Ontogenetic Niche Shifts Have Limited Potential for Population Growth and Top-Down Control of Their Prey.
Week 2	9/23	[黃以斯, textbook] Chapter 3, <br> [Jin Gao, paper] Vert-pre et al. Frequency and intensity of productivity regime shifts in marine fish stocks. PNAS 2013. <br> [paper, 林佩萱] Molecular Approach to the Identification of Fish in the South China Sea.
Week 3	09/30	[楊箴芸, textbook] Chapter 4, <br> [呂曉沛, research progress] The explanatory power of environmental factors varies according to hydrography: a test of taxonomic resolution on bacterial communities in the East China Sea. <br> [林祐如, paper] DNA barcode-based identification of commercially caught cutlassfishes(Family: Trichiuridae) with a phylogenetic assessment.
Week 4	10/07	[鄭匡庭 & 張俊偉, textbook] Chapter 5 & 1+Introduction, <br> [林立, paper] Genetic analyses of ling (Molva molva) in the Northeast Atlantic reveal patterns relevant to stock assessments and management advice.
Week 5	10/14	[張格唯, textbook] Chapter 6, <br> [杜貞儀, paper] When phenology matters: age-size truncation alters population response to trophic mismatch. <br> [林子楊, paper] Ecological correlates of the distribution limits of two Poeciliid species along a salinity gradient.
Week 6	10/21	[吳沂潔, textbook] Chapter 7, <br> [賴昭成, research progress]Temporal variation of community respiration in Fei-Tsui Reservoir.
Week 7	10/28	[林立, textbook] Chapter 8, <br> [林梵絃, research progress] The pattern of relationship between size structure and environmental variance in oligotrophic Kuroshio. <br> [張俊偉, research progress]Causality of biodiversity and ecosystem functioning of phytoplankton in aquatic ecosystems.
Week 8	11/04	[林佩萱, textbook] Chapter 9, <br> [黃以斯, paper]Water nutrient stoichiometry modifies the nutritional quality of phytoplankton and somatic growth of crustacean mesozooplankton. <br> [陳穎萱, paper]Temperature-related variation in growth rate, size, maturation and life span in a marine herbivorous fish over a latitudinal gradient.
Week 9	11/11	[林祐如, textbook] Chapter 10, <br> [楊箴芸, paper]Relationship between bacterial community composition and bottom-up versus topdown variables in four eutrophic shallow lakes. <br> [葉怡君, paper]Riverscape heterogeneity explains spatial variation in zooplankton functional evenness and biomass in a large river ecosystem.
Week 10	11/18	[江勻楷, textbook] Chapter 11, <br> [鄭匡庭, paper] Combined effects of exploitation and temperature on fish stocks in the Northeast Atlantic. <br> [黃煒忠, research progress]
Week 11	11/25	[林子楊, textbook] Chapter 12, <br> [張格唯, paper] Growth and movement pattern of early juvenile European anchovy (Engraulis encrasicolus L.) in the Bay of Biscay based on otolith microstructure and chemistry. <br> [何珮綺, research progress] Summer hypoxia determines the coupling of methanotrophic and pelagic foodweb.
Week 12	12/02	[吳沂潔, paper] Coexistence and evolutionary dynamics mediated by seasonal environmental variation in annual plant communities. <br> [歐冠婷, research progress]
Week 13	12/9	[鄭琬萱, textbook] Chapter 14, <br> [林立, Research progress]
Week 14	12/16	[林佩萱, textbook] Chapter 15, <br> [楊捷旭, paper]
Week 15	12/23	[鄭琬萱, textbook] Chapter 16, <br> [黃以斯, paper]
Week 16	12/30	[杜貞儀, textbook] Chapter 17, <br> [江勻楷, Research progress] Bioenergetic modeling to explore the effects of temperature on larval growth rates for cutlassfish Trichiurus japonicus in the subtropical ocean. <br> [鄭匡庭, Research progress] How temperature and fishing affects on the size structure of fish population.
Week 17	1/06	[林子楊, textbook] Chapter 18, <br> [張格唯, paper] Population Structure of a Neotropical Migratory Fish: Contrasting Perspectives from Genetic and Otolith Microchemistry. <br> [楊箴芸, Research progress] Linking biodiversity of marine bacterioplankton and nanoflagellates from the south East China Sea.